Online Resources… Thanks to the brilliant people who made them and are maintaining them too…. This is just a repository for easy access to newbies…

• Proteins+ : It is an amazing server for most of your protein related queries, including custom ones which you can upload. https://proteins.plus/

• WhatIf : This is another web interface to perform protein analysis including H-bonds, solvents, and structure analysis. https://swift.cmbi.umcn.nl/servers/html/index.html

• Calculator: This is used heavily for assessing everyday protein qualities like charge distribution, Isoelectric point, Extinction Coefficients: http://protcalc.sourceforge.net/

• SwissDoc: Your standard docking platform. http://www.swissdock.ch/

• SwissParam: Standard parameterization platform, but doesn’t work for all force fields. https://www.swissparam.ch/

• SwissModel: Standard homology Modeling platform. https://swissmodel.expasy.org/interactive

• ROSIE: This is a one-stop-shop for many many different in siico protocols, check it out. Hosted by GrayLab at JHU. https://rosie.graylab.jhu.edu/

• KBbox: Full Toolbox for many different kinds of molecular docking, modeling and simulations. https://kbbox.h-its.org/toolbox/tools/preparation-and-general-modelling-tools/sda/

• LigPlot+ : This is great for making figures of interacting ligands. https://www.ebi.ac.uk/thornton-srv/software/LigPlus/